Advanced software tool for spatial transcriptome analysis. Integrates cell type annotation, microenvironment prediction, and cell-cell interaction analysis using Visium HD data. Revolutionizes the understanding of spatial gene expression patterns in tumor research.
Spatial Transcriptomics
Visium HD
Cell Interaction
Python
Machine Learning
Innovative filtering pipeline for FFPE (Formalin-Fixed Paraffin-Embedded) sample sequence errors. Dramatically reduces false positives through 8-stage statistical analysis processes, contributing to improved clinical diagnostic accuracy.
FFPE Analysis
Bioinformatics
Statistical Analysis
R
Docker
Comprehensive clinical sequencing analysis platform for C-CAT database. Flexible Exploration for Liquid and Solid tumor clinical sequencing data. GUI-based intuitive interface supports exploratory research based on clinical questions in daily clinical practice.
C-CAT
Clinical Genomics
Survival Analysis
R Shiny
Web Application